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$ ffmpeg -i bummer.mkv -acodec libfaac bummer2.mkv
ffmpeg version 0.7.3-4:0.7.3-0ubuntu0.11.10.1, Copyright (c) 2000-2011 the Libav developers
built on Jan 4 2012 16:08:51 with gcc 4.6.1
configuration: --extra-version='4:0.7.3-0ubuntu0.11.10.1' --arch=amd64 --prefix=/usr --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --enable-libvpx --enable-runtime-cpudetect --enable-vaapi --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdc1394 --enable-shared --disable-static
WARNING: library configuration mismatch
avutil configuration: --extra-version='4:0.7.3ubuntu0.11.10.1' --arch=amd64 --prefix=/usr --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --enable-libvpx --enable-runtime-cpudetect --enable-vaapi --enable-libopenjpeg --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdirac --enable-libmp3lame --enable-librtmp --enable-libx264 --enable-libxvid --enable-libvo-aacenc --enable-version3 --enable-libvo-amrwbenc --enable-version3 --enable-libdc1394 --enable-shared --disable-static
avcodec configuration: --extra-version='4:0.7.3ubuntu0.11.10.1' --arch=amd64 --prefix=/usr --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --enable-libvpx --enable-runtime-cpudetect --enable-vaapi --enable-libopenjpeg --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdirac --enable-libmp3lame --enable-librtmp --enable-libx264 --enable-libxvid --enable-libvo-aacenc --enable-version3 --enable-libvo-amrwbenc --enable-version3 --enable-libdc1394 --enable-shared --disable-static
avformat configuration: --extra-version='4:0.7.3ubuntu0.11.10.1' --arch=amd64 --prefix=/usr --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --enable-libvpx --enable-runtime-cpudetect --enable-vaapi --enable-libopenjpeg --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdirac --enable-libmp3lame --enable-librtmp --enable-libx264 --enable-libxvid --enable-libvo-aacenc --enable-version3 --enable-libvo-amrwbenc --enable-version3 --enable-libdc1394 --enable-shared --disable-static
avfilter configuration: --extra-version='4:0.7.3ubuntu0.11.10.1' --arch=amd64 --prefix=/usr --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --enable-libvpx --enable-runtime-cpudetect --enable-vaapi --enable-libopenjpeg --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdirac --enable-libmp3lame --enable-librtmp --enable-libx264 --enable-libxvid --enable-libvo-aacenc --enable-version3 --enable-libvo-amrwbenc --enable-version3 --enable-libdc1394 --enable-shared --disable-static
swscale configuration: --extra-version='4:0.7.3ubuntu0.11.10.1' --arch=amd64 --prefix=/usr --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --enable-libvpx --enable-runtime-cpudetect --enable-vaapi --enable-libopenjpeg --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdirac --enable-libmp3lame --enable-librtmp --enable-libx264 --enable-libxvid --enable-libvo-aacenc --enable-version3 --enable-libvo-amrwbenc --enable-version3 --enable-libdc1394 --enable-shared --disable-static
libavutil 51. 7. 0 / 51. 7. 0
libavcodec 53. 6. 0 / 53. 6. 0
libavformat 53. 3. 0 / 53. 3. 0
libavdevice 53. 0. 0 / 53. 0. 0
libavfilter 2. 4. 0 / 2. 4. 0
libswscale 2. 0. 0 / 2. 0. 0
libpostproc 52. 0. 0 / 52. 0. 0
[matroska,webm @ 0x1f14540] Estimating duration from bitrate, this may be inaccurate

Seems stream 0 codec frame rate differs from container frame rate: 47.95 (5994/125) -> 23.98 (24000/1001)
Input #0, matroska,webm, from 'bummer.mkv':
Duration: 00:05:33.82, start: 0.000000, bitrate: N/A
Stream #0.0: Video: h264 (High), yuv420p, 1280x720, PAR 1:1 DAR 16:9, 23.98 fps, 23.98 tbr, 1k tbn, 47.95 tbc (default)
Stream #0.1(eng): Audio: aac, 48000 Hz, stereo, s16 (default)
Metadata:
title : English
Unknown encoder 'libfaac'